Does your SMU1 also have a 4200-PA?
In your pseudocode, you have a DV2 but no other parameters. Is SMU2 playing a role in this setup?
If you run an ITM out of KITE for the voltage sweep on the 80KΩ, any clicking then?
Sounds like some range selection issues are going on with the clicking.
Especially if you have the 4200-PA, you could try using the RG command to exclude some of the lowest and most sensitive ranges.
Without a pre-amp, the 100nA and higher ranges are available from the SMU.