Capturing Help for MSO58

I want to capture and collect up to 1000 Waveforms after each individual trigger, and am trying to figure out the best way to do this. I currently use Openchoice but since I am more familiar with MATLAB, I wonder if there is an update to get the MSO58 working with the software. Is MATLAB compatible with the MSO58? If not, please explain how I can perform this process in Openchoice.

Yes, you can use MATLAB. You can use NI-VISA with MATLAB where you can test commands for syntax or execution errors.